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position-specific iterated basic local alignment search tool (psi-blast)  (Biotechnology Information)

 
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    Structured Review

    Biotechnology Information position-specific iterated basic local alignment search tool (psi-blast)
    Position Specific Iterated Basic Local Alignment Search Tool (Psi Blast), supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/position-specific+iterative+basic+local+alignment+search+tool+(psi-blast/position+specific+iterated+blast/pm36577516-21-13-24
    Average 90 stars, based on 1 article reviews
    position-specific iterated basic local alignment search tool (psi-blast) - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Sequencing:

    Article Title: HPC-Atlas: Computationally Constructing A Comprehensive Atlas of Human Protein Complexes
    Article Snippet: The PSSM of a protein was evaluated by multiple sequence alignments with position-specific iterative basic local alignment search tool (PSI-BLAST) to search against the National Center of Biotechnology Information (NCBI) non-redundant database .

    Article Title: A bacterial negative transcription regulator binding on an inverted repeat in the promoter for epothilone biosynthesis
    Article Snippet: The position-specific iterative basic local alignment search tool (PSI-BLAST) [ ] was used to search for homologous proteins of Esi in the US National Center for Biotechnology Information (NCBI) reference sequence (RefSeq) database [ ].

    Article Title: Ribonuclease T2 represents a distinct circularly permutated version of the BECR RNases.
    Article Snippet: Review Editor: Nir Ben-Tal Abstract Detection of homologous relationships among proteins and understanding their mechanisms of diversification are major topics in the fields of protein science, bioinformatics, and phylogenetics.. Recent developments in sequence/ profile-based and structural similarity-based methods have greatly facilitated the unification and classification of many protein families into superfamilies or folds, yet many proteins remain unclassified in current protein databases.. As one of the three earliest identified RNases in biology, ribonuclease T2, also known as RNase I in Escherichia coli, RNase Rh in fungi, or S-RNase in plant, is thought to be an ancient RNase family due to its widespread distribution and distinct structure.

    Article Title: Homology modeling and molecular docking of human pituitary adenylate cyclase-activating polypeptide I receptor
    Article Snippet: Similarity searches for the sequence were conducted using Position-Specific Iterative Basic Local Alignment Search Tool (PSI-BLAST) provided by the National Center for Biotechnology Information and, following the selection of the NCBI-BLAST contrast results, the sequence was labeled as 2JOD and 3N94.

    Article Title: Genomic discovery and structural dissection of a novel type of polymorphic toxin system in gram-positive bacteria
    Article Snippet: In order to retrieve homologous sequences, iterative sequence-profile searches were run for each domain family until convergence via the Position-Specific Iterative Basic Local Alignment Search Tool (PSI-BLAST) against the nonredundant protein (nr) database of the National Center for Biotechnology Information (NCBI), with a cut-off e-value of 0.001.

    Article Title: A Newly Determined Member of the meso -Diaminopimelate Dehydrogenase Family with a Broad Substrate Spectrum
    Article Snippet: The position-specific iterative basic local 95 alignment search tool (PSI-BLAST) was used to search for meso-DAPDHs in the US 96 National Center for Biotechnology Information (NCBI) reference sequence (RefSeq) 97 database.

    Selection:

    Article Title: HPC-Atlas: Computationally Constructing A Comprehensive Atlas of Human Protein Complexes
    Article Snippet: The PSSM of a protein was evaluated by multiple sequence alignments with position-specific iterative basic local alignment search tool (PSI-BLAST) to search against the National Center of Biotechnology Information (NCBI) non-redundant database .

    Article Title: A bacterial negative transcription regulator binding on an inverted repeat in the promoter for epothilone biosynthesis
    Article Snippet: The position-specific iterative basic local alignment search tool (PSI-BLAST) [ ] was used to search for homologous proteins of Esi in the US National Center for Biotechnology Information (NCBI) reference sequence (RefSeq) database [ ].

    Article Title: Ribonuclease T2 represents a distinct circularly permutated version of the BECR RNases.
    Article Snippet: Review Editor: Nir Ben-Tal Abstract Detection of homologous relationships among proteins and understanding their mechanisms of diversification are major topics in the fields of protein science, bioinformatics, and phylogenetics.. Recent developments in sequence/ profile-based and structural similarity-based methods have greatly facilitated the unification and classification of many protein families into superfamilies or folds, yet many proteins remain unclassified in current protein databases.. As one of the three earliest identified RNases in biology, ribonuclease T2, also known as RNase I in Escherichia coli, RNase Rh in fungi, or S-RNase in plant, is thought to be an ancient RNase family due to its widespread distribution and distinct structure.

    Article Title: Homology modeling and molecular docking of human pituitary adenylate cyclase-activating polypeptide I receptor
    Article Snippet: Similarity searches for the sequence were conducted using Position-Specific Iterative Basic Local Alignment Search Tool (PSI-BLAST) provided by the National Center for Biotechnology Information and, following the selection of the NCBI-BLAST contrast results, the sequence was labeled as 2JOD and 3N94.

    Article Title: Genomic discovery and structural dissection of a novel type of polymorphic toxin system in gram-positive bacteria
    Article Snippet: In order to retrieve homologous sequences, iterative sequence-profile searches were run for each domain family until convergence via the Position-Specific Iterative Basic Local Alignment Search Tool (PSI-BLAST) against the nonredundant protein (nr) database of the National Center for Biotechnology Information (NCBI), with a cut-off e-value of 0.001.

    Article Title: A Newly Determined Member of the meso -Diaminopimelate Dehydrogenase Family with a Broad Substrate Spectrum
    Article Snippet: The position-specific iterative basic local 95 alignment search tool (PSI-BLAST) was used to search for meso-DAPDHs in the US 96 National Center for Biotechnology Information (NCBI) reference sequence (RefSeq) 97 database.

    Labeling:

    Article Title: HPC-Atlas: Computationally Constructing A Comprehensive Atlas of Human Protein Complexes
    Article Snippet: The PSSM of a protein was evaluated by multiple sequence alignments with position-specific iterative basic local alignment search tool (PSI-BLAST) to search against the National Center of Biotechnology Information (NCBI) non-redundant database .

    Article Title: A bacterial negative transcription regulator binding on an inverted repeat in the promoter for epothilone biosynthesis
    Article Snippet: The position-specific iterative basic local alignment search tool (PSI-BLAST) [ ] was used to search for homologous proteins of Esi in the US National Center for Biotechnology Information (NCBI) reference sequence (RefSeq) database [ ].

    Article Title: Ribonuclease T2 represents a distinct circularly permutated version of the BECR RNases.
    Article Snippet: Review Editor: Nir Ben-Tal Abstract Detection of homologous relationships among proteins and understanding their mechanisms of diversification are major topics in the fields of protein science, bioinformatics, and phylogenetics.. Recent developments in sequence/ profile-based and structural similarity-based methods have greatly facilitated the unification and classification of many protein families into superfamilies or folds, yet many proteins remain unclassified in current protein databases.. As one of the three earliest identified RNases in biology, ribonuclease T2, also known as RNase I in Escherichia coli, RNase Rh in fungi, or S-RNase in plant, is thought to be an ancient RNase family due to its widespread distribution and distinct structure.

    Article Title: Homology modeling and molecular docking of human pituitary adenylate cyclase-activating polypeptide I receptor
    Article Snippet: Similarity searches for the sequence were conducted using Position-Specific Iterative Basic Local Alignment Search Tool (PSI-BLAST) provided by the National Center for Biotechnology Information and, following the selection of the NCBI-BLAST contrast results, the sequence was labeled as 2JOD and 3N94.

    Article Title: Genomic discovery and structural dissection of a novel type of polymorphic toxin system in gram-positive bacteria
    Article Snippet: In order to retrieve homologous sequences, iterative sequence-profile searches were run for each domain family until convergence via the Position-Specific Iterative Basic Local Alignment Search Tool (PSI-BLAST) against the nonredundant protein (nr) database of the National Center for Biotechnology Information (NCBI), with a cut-off e-value of 0.001.

    Article Title: A Newly Determined Member of the meso -Diaminopimelate Dehydrogenase Family with a Broad Substrate Spectrum
    Article Snippet: The position-specific iterative basic local 95 alignment search tool (PSI-BLAST) was used to search for meso-DAPDHs in the US 96 National Center for Biotechnology Information (NCBI) reference sequence (RefSeq) 97 database.



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